PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04290g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 403aa    MW: 44430.7 Da    PI: 7.653
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04290g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.81.1e-39812532131
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 
                               ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++  + s +ss+s+ 
  Niben101Scf04290g01001.1  81 PPKRTSTKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSM 165
                               789******************************************************************9998777777777755 PP

                       TCP  86 ssg..........................................kaaksaakskksqksaasalnlakesrakarararertre 128
                               s +                                           + + +++ + +q+   + l+l + s +++ +r+r ++ +
  Niben101Scf04290g01001.1 166 SVPsqlrssyfspnfslsqrrglfqgiglssdrsastllnfqtgnTNPSMNHQLQAKQEMRDNSLDLTETSIEESLSRKRRQEVD 250
                               5556667778888888999999999999987777777777777652233333333344444444666666666666664443333 PP

                       TCP 129 kmr 131
                                ++
  Niben101Scf04290g01001.1 251 LQQ 253
                               333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.3E-4585258IPR005333Transcription factor, TCP
PROSITE profilePS5136927.57487141IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDGGGDDHFY HQHQHHHHHH QYRQNNFPFQ LLEKKEDEPC SSSSTAAYNY PSLAISPSDH  60
TNTNPSNDNT LQITETSKKP PPKRTSTKDR HTKVDGRGRR IRMPALCAAR IFQLTRELGH  120
KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSVPSQ LRSSYFSPNF  180
SLSQRRGLFQ GIGLSSDRSA STLLNFQTGN TNPSMNHQLQ AKQEMRDNSL DLTETSIEES  240
LSRKRRQEVD LQQQQQQQQQ HDQQQQMGSY LLQSSTGSMS ASHSSIPANF WMLTNNNSQV  300
LGGDPVWTFP SVSNSAAALY RSTMSSGLHF MNFPAPMALL PTQQLGTSLV GNSTGTSLNE  360
GQLGMVTGLN PYRQRSGVSE SQASGSHSHH GGADDRNDTT SHH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246SRKRRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016472329.10.0PREDICTED: transcription factor TCP14-like
SwissprotQ93Z002e-67TCP14_ARATH; Transcription factor TCP14
TrEMBLM1D6K80.0M1D6K8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000831480.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28822351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.18e-55TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14